Cystic fibrosis
Only variants associated with classical Cystic Fibrosis are reported. Intron 8 polymorphic region in CFTR gene (5T allele) is only reported when the NM_000492.4:c.350G>A (p.Arg117His) variant is detected.
Alpha-thalassemia
Whole gene analysis is not performed. Included variants: --MED ; --SEA ; --THAI ; - α3.7 ; - α4.2 ; - α20.5 ; --FIL; Hb Constant Spring (NM_000517.4:c.427T>C)
Phenylketonuria
Deafness autosomal recessive type 1A
Variants associated with a mild phenotype are not reported.
Spinal Muscular Atrophy
Only deletion of the exon 7 in SMN1 gene is included. No sequencing or deletion/duplication analysis is conducted in other regions of this gene. This test does not detect “silent” carriers of SMA, who have two copies of the SMN1 gene on one chromosome and none on the other.
Dihydropyrimidine dehydrogenase deficiency
Medium-chain acyl-CoA dehydrogenase deficiency
Pseudoxanthoma elasticum; Generalized arterial calcification of infancy type 2
Oculocutaneous albinism type 1A/1B
NM_000372.5:c.1205G>A, p.(Arg402Gln) hypomorphic variant is associated with milder clinical manifestations is not reported.
Beta-thalassemia; Sickle cell disease
Congenital disorder of glycosylation type 1A
Ellis Van Creveld syndrome
Wilson disease
Pompe disease
Crigler-Najjar syndrome type 1 and 2
Variants in the UGT1A1 gene associated with Gilbert syndrome are not reported.
Methylmalonic acidemia with homocystinuria type cblC
Fragile X syndrome
5' UTR CGG trinucleotide repeats are analysed. Only alleles in the range of full mutation (>200 repeats) and premutation (55-200 repeats) are reported. Mosaicism, including gonadal mosaicism, may not be detected.
Systemic primary carnitine deficiency
Krabbe disease
Congenital myasthenic syndrome type 12
Oculocutaneous albinism type 2
Aicardi-Goutières syndrome type 2
Glutaricaciduria type 1
Alport syndrome type 3B
Leber congenital amaurosis type 8; Retinitis pigmentosa type 12
Retinitis pigmentosa type 25
Very long-chain acyl-CoA dehydrogenase deficiency
Nephrotic syndrome type 1
Biotinidase Deficiency
NM_001370658.1:c.1270G>C (p.Asp424His) variant is not reported, due to low disease penetrance and its association to reduced enzyme activity in the homozygous state.
Carnitine palmitoyltransferase deficiency type 2
Classic congenital adrenal hyperplasia due to 21-hydroxylase deficiency
Whole gene analysis is not performed. Included variants: NM_000500.9:c.293-13C/A>G, NM_000500.9:c.332_339del, NM_000500.9:c.518T>A, NM_000500.9:c.710T>A, NM_000500.9:c.713T>A, NM_000500.9:c.719T>A, NM_000500.9:c.923dup, NM_000500.9:c.955C>T, NM_000500.9:c.1069C>T, 30kb deletion, Large gene conversion. NM_000500.9:c.955C>T variant is only reported when a CYP21A2 gene duplication is not detected. c.955C>T variant along witht the gene duplication has been rerported to be frequently found on the same chromosome (in cis), which results in the presence of two functional copies of the gene. In such cases, the individual is not considered a carrier for Congenital Adrenal Hyperplasia (Parajes et al., 2008; Kleinle et al., 2009).
Coats plus syndrome
Galactosemia
Hemophilia A
Detection of intron 22 inversion in the F8 gene is also included
"Shwachman-Diamond syndrome type 1
Niemann-Pick disease type A/B
Usher syndrome type 2A; Retinitis pigmentosa type 39
Polycystic kidney disease type 4
Anauxetic dysplasia type 1; Metaphyseal dysplasia without hypotrichosis; Cartilage-hair hypoplasia
Congenital glaucoma type 3A; Anterior segment developmental anomaly
Smith-Lemli-Opitz syndrome
POLG related disorders
Interstitial lung disease due to ABCA3 deficiency
X-linked recessive ocular albinism; Congenital Nystagmus type 6
Short rib-polydactyly syndrome type 3
TMEM67 related disorders
Argininosuccinic aciduria
Duchenne muscular dystrophy; Becker muscular dystrophy
Tay-Sachs disease
Myotonia congenita
Deafness autosomal recessive type 3
Dystrophic epidermolysis bullosa COL7A1-Related
Infantile hypophosphatasia
Limb-girdle muscular dystrophy type 2A
Pendred syndrome; Deafness autosomal recessive type 4
Primary ciliary dyskinesia type 3
"Wiedemann-Rautenstrauch syndrome
Hypomyelinating leukodystrophy type 7"
Mucopolysaccharidosis type 2
Warsaw breakage syndrome
Oculocutaneous albinism type 4
Congenital amegakaryocytic thrombocytopenia type 1
Canavan disease
Androgen insensitivity syndrome
The current testing method does not assess CAG trinucleotide repeats in exon 1 in this gene.
Hemophilia B
Bardet-Biedl syndrome; Joubert syndrome; Meckel syndrome
Hereditary fructose intolerance
Classical homocystinuria
Achromatopsia type 2
CEP290 related disorders
Deep intronic variant NM_025114.4:c.2991+1655A>G not included.
Achromatopsia type 3
Citrullinemia type 2
Familial dysautonomia
Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; X-linked thrombocytopenia
Glycogen storage disease type 4; Adult polyglucosan body disease
Lethal congenital contracture syndrome type 1; Arthrogryposis-anterior horn cell disease syndrome
Hydrolethalus Syndrome
Ivemark syndrome
Combined oxidative phosphorylation deficiency type 3
Hypohidrotic ectodermal dysplasia type 1
X-linked centronuclear myopathy
Pyruvate dehydrogenase E3 deficiency
PRPS1 related disorders
Alport syndrome type 1
Myopia type 6
Adrenomyeloneuropathy
Choroideremia
X-linked heterotaxia; VACTERL with hydrocephalus
Fabry disease
AIFM1 related disorders
IPEX syndrome
Retinoschisis
Aspartylglucosaminuria
Cerebral creatine deficiency syndrome type 1
X-linked intellectual developmental disorder type 1
Barth syndrome
RETT related disorders
Joubert syndrome type 10
Lissencephaly type 1; Subcortical band heterotopia
Mulibrey nanism syndrome
X-linked lymphoproliferative syndrome type 2
X-linked epilepsy-learning disabilities-behavior disorders syndrome; X-linked intellectual developmental disorder type 50
Ornithine transcarbamylase deficiency
FG syndrome type 4; X-linked intellectual developmental disorder, Najm type
Deafness autosomal recessive type 1B
Variants associated with a mild phenotype are not reported.
Erythrokeratodermia variabilis type 1
Variants associated with a mild phenotype are not reported.