Ovarioleukodystrophy; Combined oxidative phosphorylation defect type 8
Interstitial lung disease due to ABCA3 deficiency
Progressive familial intrahepatic cholestasis type 2
Pseudoxanthoma elasticum; Generalized arterial calcification of infancy type 2
Permanent neonatal diabetes mellitus type 3; Hyperinsulinemic hypoglycemia familial type 1
Adrenomyeloneuropathy
Medium-chain acyl-CoA dehydrogenase deficiency
Very long-chain acyl-CoA dehydrogenase deficiency
Usher syndrome type 2
Aspartylglucosaminuria
Glycogen storage disease type 3A/3B
Primary hyperoxaluria type 1
AIFM1 related disorders
Autoimmune polyendocrinopathy type 1
Succinic semialdehyde dehydrogenase deficiency
Pyridoxine-dependent epilepsy type 4
Hereditary fructose intolerance
Alström syndrome
Congenital ichthyosis type 2
Congenital ichthyosis type 3
Infantile hypophosphatasia
Androgen insensitivity syndrome
The current testing method does not assess CAG trinucleotide repeats in exon 1 in this gene.
Metachromatic leukodystrophy
Mucopolysaccharidose type 6
Argininosuccinic aciduria
Canavan disease
Autosomal recessive primary microcephaly type 5
Citrullinemia type 1
Ataxia-telangiectasia
Wilson disease
Seckel syndrome type 1
ATR-X syndrome
Peters plus syndrome
Bardet-Biedl syndrome type 1
Bardet-Biedl syndrome type 10
Retinitis pigmentosa type 74; Bardet-Biedl syndrome type 2
Maple syrup urine disease type 1A
Maple syrup urine disease type 1B
GRACILE syndrome; Björnstad syndrome; Isolated complex III deficiency
Meester-Loeys syndrome; X-linked spondyloepimetaphyseal dysplasia
Fanconi anemia group J
Biotinidase Deficiency
NM_001370658.1:c.1270G>C (p.Asp424His) variant is not reported, due to low disease penetrance and its association to reduced enzyme activity in the homozygous state.
Isolated growth hormone deficiency type 3; X-linked agammaglobulinemia
Limb-girdle muscular dystrophy type 2A
FG syndrome type 4; X-linked intellectual developmental disorder, Najm type
Classical homocystinuria
CC2D2A related disorders
Primary ciliary dyskinesia type 17
Primary ciliary dyskinesia type 15
Immunodeficiency with hyper-IgM type 1
Usher syndrome type 1D; Deafness autosomal recessive type 12
Autosomal recessive primary microcephaly type 9; Seckel syndrome type 5
CEP290 related disorders
Deep intronic variant NM_025114.4:c.2991+1655A>G not included.
Complement factor I deficiency
Cystic fibrosis
Only variants associated with classical Cystic Fibrosis are reported. Intron 8 polymorphic region in CFTR gene (5T allele) is only reported when the NM_000492.4:c.350G>A (p.Arg117His) variant is detected.
Choroideremia
Congenital myasthenic syndrome type 4A, 4B, 4C
Lethal multiple pterygium syndrome; Escobar syndrome
Myotonia congenita
CLCN5 related disorders
Usher syndrome type 3A
Achromatopsia type 2
Achromatopsia type 3
Knobloch syndrome type 1
Alport syndrome type 3B
Alport syndrome type 1
Ullrich congenital muscular dystrophy type 1B; Bethlem muscular dystrophy type 1B
Bethlem muscular dystrophy type 1C; Ullrich congenital muscular dystrophy type 1C; Primary dystonia, DYT27 type
Dystrophic epidermolysis bullosa COL7A1-Related
Congenital myasthenic syndrome type 5
Primary coenzyme Q10 deficiency type 4
Orofaciodigital syndrome type 6; Joubert syndrome type 17
Carbamoyl-phosphate synthetase 1 deficiency
Carnitine palmitoyltransferase deficiency type 2
Leber congenital amaurosis type 8; Retinitis pigmentosa type 12
Focal segmental glomerulosclerosis type 9; Ventriculomegaly-cystic kidney disease
Coats plus syndrome
Nephropathic cystinosis
X-linked intellectual developmental disorder, Cabezas type
Immunodeficiency 34; Chronic granulomatous disease
Congenital glaucoma type 3A; Anterior segment developmental anomaly
Classic congenital adrenal hyperplasia due to 21-hydroxylase deficiency
Whole gene analysis is not performed. Included variants: NM_000500.9:c.293-13C/A>G, NM_000500.9:c.332_339del, NM_000500.9:c.518T>A, NM_000500.9:c.710T>A, NM_000500.9:c.713T>A, NM_000500.9:c.719T>A, NM_000500.9:c.923dup, NM_000500.9:c.955C>T, NM_000500.9:c.1069C>T, 30kb deletion, Large gene conversion. NM_000500.9:c.955C>T variant is only reported when a CYP21A2 gene duplication is not detected. c.955C>T variant along witht the gene duplication has been rerported to be frequently found on the same chromosome (in cis), which results in the presence of two functional copies of the gene. In such cases, the individual is not considered a carrier for Congenital Adrenal Hyperplasia (Parajes et al., 2008; Kleinle et al., 2009)." ;CYP27A1;2;Autosomal recessive;Cerebrotendinous xanthomatosis; ;CYP7B1;8;Autosomal recessive;"Spastic paraplegia type 5A; Congenital bile acid synthesis defect type 3
Lissencephaly type 1; Subcortical band heterotopia
Warsaw breakage syndrome
Congenital chronic diarrhea with protein-losing enteropathy
Smith-Lemli-Opitz syndrome
Retinitis pigmentosa type 59
Pyruvate dehydrogenase E3 deficiency
Intellectual developmental disorder type 90
Duchenne muscular dystrophy; Becker muscular dystrophy
Primary ciliary dyskinesia type 13
Primary ciliary dyskinesia type 7
Primary ciliary dyskinesia type 3
Primary ciliary dyskinesia type 1
Hyperphenylalaninemia due to DNAJC12 deficiency
Adams-Oliver syndrome type 2
Combined immunodeficiency due to DOCK8 deficiency
Fetal akinesia deformation sequence; Congenital myasthenic syndrome type 10
Dihydropyrimidine dehydrogenase deficiency
Short rib-polydactyly syndrome type 3
Limb-girdle muscular dystrophy type 2B; Miyoshi myopathy; Distal myopathy with anterior tibial onset
Hypohidrotic ectodermal dysplasia type 1
Leukoencephalopathy with vanishing white matter type 5
Familial dysautonomia
Emery-Dreifuss muscular dystrophy type 1
Xeroderma pigmentosum group D; Trichothiodystrophy type 1
Cockayne syndrome type B; Cerebrooculofacioskeletal syndrome type 1; UV-sensitive syndrome type 1
Glutaric aciduria type 2C
Ellis Van Creveld syndrome
Retinitis pigmentosa type 25
Hemophilia A
Detection of intron 22 inversion in the F8 gene is also included
Hemophilia B
Fanconi anemia group A
Fanconi anemia group C
Fanconi anemia group I
Fumarase deficiency
FHL1 related disorders
Muscular dystrophy-dystroglycanopathy type 5A, 5B, 5C
Muscular dystrophy-dystroglycanopathy type 4A, 4B, 4C
FLNA related disorders
Fragile X syndrome
5' UTR CGG trinucleotide repeats are analysed. Only alleles in the range of full mutation (>200 repeats) and premutation (55-200 repeats) are reported. Mosaicism, including gonadal mosaicism, may not be detected.
IPEX syndrome
Fraser syndrome type 1
Glycogen storage disease type 1A
Pompe disease
Krabbe disease
Mucopolysaccharidosis type 4A
Galactosemia
Cerebral creatine deficiency syndrome type 3
Glycogen storage disease type 4; Adult polyglucosan body disease
Glutaricaciduria type 1
Ivemark syndrome
Congenital myasthenic syndrome type 12
Deafness autosomal recessive type 1A
Variants associated with a mild phenotype are not reported.
Erythrokeratodermia variabilis type 1
Variants associated with a mild phenotype are not reported.
Deafness autosomal recessive type 1B
Variants associated with a mild phenotype are not reported.
Fabry disease
GM1 gangliosidosis type 1,2,3; Mucopolysaccharidosis type 4B
Glycine encephalopathy type 1
Lethal congenital contracture syndrome type 1; Arthrogryposis-anterior horn cell disease syndrome
Muscular dystrophy due to dystroglycanopathy type 14A, 14B ,14C
X-linked recessive ocular albinism; Congenital Nystagmus type 6
Leber congenital amaurosis type 1; Cone rod dystrophy type 6; Congenital stationary night blindness type 1I
Long chain 3-hydroxyacyl-CoA dehydrogenase deficiency; Mitochondrial trifunctional protein deficiency
Alpha-thalassemia
Whole gene analysis is not performed. Included variants: --MED ; --SEA ; --THAI ; - α3.7 ; - α4.2 ; - α20.5 ; --FIL; Hb Constant Spring (NM_000517.4:c.427T>C)" ;HBB;11;Autosomal recessive;"Beta-thalassemia; Sickle cell disease
Developmental delay with autism spectrum disorder and gait instability
Tay-Sachs disease
Sandhoff disease
HMG-CoA lyase deficiency
Kelley-Seegmiller syndrome; Lesch-Nyhan syndrome
X-linked intellectual developmental disorder, Tuner type
Hydrolethalus Syndrome
Mucopolysaccharidosis type 2
Mucopolysaccharidosis type 1
IL10-related early-onset inflammatory bowel disease type 28
X-linked intellectual developmental disorder type 21
X-linked combined immunodeficiency
X-linked intellectual developmental disorder type 1
Junctional epidermolysis bullosa with pyloric atresia type 5B; Intermediate generalized junctional epidermolysis bullosa type 5A
Isovaleric acidemia
Jervell and Lange-Nielsen syndrome
KDM5C-related syndromic X-linked intellectual developmental disorder
MASA syndrome; Hydrocephalus with stenosis of the aqueduct of Sylvius
Poretti-Boltshauser syndrome
Laminin subunit alpha 2-related congenital muscular dystrophy
Cholesteryl ester storage disease; Wolman disease
Mandibuloacral dysplasia; Emery-Dreifuss muscular dystrophy type 3; Charcot-Marie-Tooth disease type 2B1
Deafness autosomal recessive type 77
Keratosis follicularis spinulosa decalvans; Ichthyosis follicularis-alopecia-photophobia syndrome; Osteogenesis imperfecta type 19
Mucolipidosis type 4
Autosomal recessive primary microcephaly type 1
RETT related disorders
Bardet-Biedl syndrome; Joubert syndrome; Meckel syndrome
Methylmalonic acidemia with homocystinuria type cblC
Methylmalonic acidemia type mut0
Congenital amegakaryocytic thrombocytopenia type 1
Ataxia-telangiectasia-like disorder type 1
X-linked centronuclear myopathy
Hyperimmunoglobulinemia D syndrome; Mevalonic aciduria
Carey-Fineman-Ziter syndrome
Deafness autosomal recessive type 3
Usher syndrome type 1B; Deafness autosomal recessive type 2
Alpha-N-acetylgalactosaminidase deficiency type 1,2,3
Sanfilippo syndrome type B
Short stature-optic atrophy-Pelger-Huët anomaly syndrome; Fever-associated acute infantile liver failure syndrome
Familial exudative vitreoretinopathy; Norrie disease
Nemaline myopathy type 2; Arthrogryposis multiplex congenita type 6
X-linked intellectual developmental disorder type 98
Multiple mitochondrial dysfunctions syndrome type 1; Spastic paraplegia type 93
Leber congenital amaurosis type 9; SHILCA syndrome
Niemann-Pick disease type C1/D
Senior-Loken syndrome type 1; Nephronophthisis type 1; Joubert syndrome type 4
Deletions in this gene will not be reported, as the low reported penetrance limits their clinical utility.
Nephronophthisis type 3; Renal-hepatic-pancreatic dysplasia type 1; Meckel syndrome type 7
Nephrotic syndrome type 1
Nephrotic syndrome type 2
Goldmann-Favre syndrome; Retinitis pigmentosa type 37
Congenital stationary night blindness type 1A
Oculocutaneous albinism type 2
Dent disease type 2; Lowe syndrome
Joubert syndrome type 10
Behr syndrome
Ornithine transcarbamylase deficiency
Phenylketonuria
Pantothenate Kinase-Associated Neurodegeneration type 1
Propionic acidemia
Usher syndrome type 1F; Deafness autosomal recessive type 23
Microcephalic osteodysplastic primordial dwarfism type 2
Pyruvate dehydrogenase E1-alpha deficiency
Pyruvate dehydrogenase E1-beta deficiency
Usher syndrome type 2
Zellweger syndrome 1A/B; Heimler syndrome 1
Glycogen storage disease type 7
Multiple congenital anomalies-hypotonia-seizures syndrome type 2; Ferro-cerebro-cutaneous syndrome
Polycystic kidney disease type 4
Infantile neuroaxonal dystrophy 1; Dystonia-parkinsonism type Paisan-Ruiz; Neurodegeneration with brain iron accumulation type 2B
Ehlers-Danlos syndrome type 6
Congenital disorder of glycosylation type 1A
Ataxia-oculomotor apraxia type 4; Early infantile epileptic encephalopathy
Spastic paraplegia type 39; Oliver-McFarlane syndrome; Boucher-Neuhäuser syndrome
POLG related disorders
Hypomyelinating leukodystrophy type 11; Treacher-Collins syndrome type 3
Wiedemann-Rautenstrauch syndrome; Hypomyelinating leukodystrophy type 7
Muscular dystrophy-dystroglycanopathy type 3A, 3B, 3C; Retinitis pigmentosa type 76
Infantile sudden cardiac failure
Neuronal ceroid lipofuscinosis type 1
Renpenning syndrome
Familial hemophagocytic lymphohistiocytosis type 2
PRPS1 related disorders
Nijmegen breakage syndrome-like disorder
Omenn syndrome; Combined immunodeficiency with granulomatosis; Severe combined immunodeficiency due to complete RAG1/2 deficiency
Fetal akinesia deformation sequence type 2; Congenital myasthenic syndrome type 11
Pontocerebellar hypoplasia type 6
TARP syndrome
Leber congenital amaurosis type 13
Baller-Gerold syndrome; Rothmund-Thomson syndrome type 2; RAPADILINO syndrome
Anauxetic dysplasia type 1; Metaphyseal dysplasia without hypotrichosis; Cartilage-hair hypoplasia
Aicardi-Goutières syndrome type 2
Cone rod dystrophy type 13; Leber congenital amaurosis type 6
Meckel syndrome type 5; Joubert syndrome type 7
Retinoschisis
Dyskeratosis congenita type 5
Familial normophosphatemic tumoral calcinosis
Shwachman-Diamond syndrome type 1
Pseudohypoaldosteronism type 1B2
Myopia type 6
Limb-girdle muscular dystrophy type 3
Mucopolysaccharidosis type 3
Charcot-Marie-Tooth disease type 4C
Allan-Herndon-Dudley syndrome
Salla disease; Free sialic acid storage disease, infantile form
Spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome
Systemic primary carnitine deficiency
Citrullinemia type 2
SLC26A2 related disorders
Congenital chloride diarrhea
Pendred syndrome; Deafness autosomal recessive type 4
Glycogen storage disease Ib, Ic
Oculocutaneous albinism type 4
Cerebral creatine deficiency syndrome type 1
Lysinuric protein intolerance
Spinal Muscular Atrophy
Only deletion of the exon 7 in SMN1 gene is included. No sequencing or deletion/duplication analysis is conducted in other regions of this gene. This test does not detect “silent” carriers of SMA, who have two copies of the SMN1 gene on one chromosome and none on the other.
Niemann-Pick disease type A/B
Juvenile amyotrophic lateral sclerosis type 5; Charcot-Marie-Tooth disease type 2X; Spastic paraplegia type 11
Charcot-Marie-Tooth disease type 4K; Isolated cytochrome C oxidase deficiency
X-linked epilepsy-learning disabilities-behavior disorders syndrome; X-linked intellectual developmental disorder type 50
Intellectual developmental disorder type 96
Barth syndrome
Congenital ichthyosis type 1
Meckel syndrome type 2; Joubert syndrome type 2; Retinitis pigmentaria type 98
TMEM67 related disorders
Ceroid lipofuscinosis neuronal tipo 2; Spinocerebellar ataxia type 7
Mulibrey nanism syndrome
Combined oxidative phosphorylation deficiency type 35
Pontocerebellar hypoplasia type 2 and 4
Combined oxidative phosphorylation deficiency type 3
Oculocutaneous albinism type 1A/1B
NM_000372.5:c.1205G>A, p.(Arg402Gln) hypomorphic variant is associated with milder clinical manifestations is not reported.
Oculocutaneous albinism type 3
Non-specific early-onset epileptic encephalopathy
Crigler-Najjar syndrome type 1 and 2
Variants in the UGT1A1 gene associated with Gilbert syndrome are not reported.
Syndromic intellectual developmental disorder type 14
Usher syndrome type 2A; Retinitis pigmentosa type 39
Intellectual developmental disorder type 99
Combined oxidative phosphorylation defect type 20
Cohen syndrome
Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; X-linked thrombocytopenia
Wolfram syndrome type 1
X-linked lymphoproliferative syndrome type 2
X-linked heterotaxia; VACTERL with hydrocephalus
X-linked intellectual developmental disorder type 97
PEHO syndrome
Cerebrotendinous xanthomatosis
Spastic paraplegia type 5A; Congenital bile acid synthesis defect type 3
Beta-thalassemia; Sickle cell disease