Cystic fibrosis
Only variants associated with classical Cystic Fibrosis are reported. Intron 8 polymorphic region in CFTR gene (5T allele) is only reported when the NM_000492.4:c.350G>A (p.Arg117His) variant is detected.
Alpha-thalassemia
Whole gene analysis is not performed. Included variants: --MED ; --SEA ; --THAI ; - α3.7 ; - α4.2 ; - α20.5 ; --FIL; Hb Constant Spring (NM_000517.4:c.427T>C)
Phenylketonuria
Deafness autosomal recessive type 1A
Variants associated with a mild phenotype are not reported.
Jervell and Lange-Nielsen syndrome
Usher syndrome type 1D; Deafness autosomal recessive type 12
Spinal Muscular Atrophy
Only deletion of the exon 7 in SMN1 gene is included. No sequencing or deletion/duplication analysis is conducted in other regions of this gene. This test does not detect “silent” carriers of SMA, who have two copies of the SMN1 gene on one chromosome and none on the other.
Dihydropyrimidine dehydrogenase deficiency
Medium-chain acyl-CoA dehydrogenase deficiency
Pseudoxanthoma elasticum; Generalized arterial calcification of infancy type 2
Combined immunodeficiency due to DOCK8 deficiency
Senior-Loken syndrome type 1; Nephronophthisis type 1; Joubert syndrome type 4
Oculocutaneous albinism type 1A/1B
NM_000372.5:c.1205G>A, p.(Arg402Gln) hypomorphic variant is associated with milder clinical manifestations is not reported.
Beta-thalassemia; Sickle cell disease
Congenital disorder of glycosylation type 1A
Ellis Van Creveld syndrome
Wilson disease
Pompe disease
Seckel syndrome type 1
Crigler-Najjar syndrome type 1 and 2
Variants in the UGT1A1 gene associated with Gilbert syndrome are not reported.
Mucopolysaccharidosis type 1
Ehlers-Danlos syndrome type 6
Autosomal recessive primary microcephaly type 9; Seckel syndrome type 5
PEHO syndrome
Nephropathic cystinosis
Methylmalonic acidemia with homocystinuria type cblC
Fetal akinesia deformation sequence type 2; Congenital myasthenic syndrome type 11
Fragile X syndrome
5' UTR CGG trinucleotide repeats are analysed. Only alleles in the range of full mutation (>200 repeats) and premutation (55-200 repeats) are reported. Mosaicism, including gonadal mosaicism, may not be detected.
Usher syndrome type 2
Focal segmental glomerulosclerosis type 9; Ventriculomegaly-cystic kidney disease
Systemic primary carnitine deficiency
Krabbe disease
Congenital myasthenic syndrome type 12
Oculocutaneous albinism type 2
Aicardi-Goutières syndrome type 2
Glutaricaciduria type 1
Alport syndrome type 3B
Leber congenital amaurosis type 8; Retinitis pigmentosa type 12
Retinitis pigmentosa type 25
Fanconi anemia group A
Fraser syndrome type 1
Very long-chain acyl-CoA dehydrogenase deficiency
Nephrotic syndrome type 1
Biotinidase Deficiency
NM_001370658.1:c.1270G>C (p.Asp424His) variant is not reported, due to low disease penetrance and its association to reduced enzyme activity in the homozygous state.
Hyperimmunoglobulinemia D syndrome; Mevalonic aciduria
Carnitine palmitoyltransferase deficiency type 2
Familial hemophagocytic lymphohistiocytosis type 2
Classic congenital adrenal hyperplasia due to 21-hydroxylase deficiency
Whole gene analysis is not performed. Included variants: NM_000500.9:c.293-13C/A>G, NM_000500.9:c.332_339del, NM_000500.9:c.518T>A, NM_000500.9:c.710T>A, NM_000500.9:c.713T>A, NM_000500.9:c.719T>A, NM_000500.9:c.923dup, NM_000500.9:c.955C>T, NM_000500.9:c.1069C>T, 30kb deletion, Large gene conversion. NM_000500.9:c.955C>T variant is only reported when a CYP21A2 gene duplication is not detected. c.955C>T variant along witht the gene duplication has been rerported to be frequently found on the same chromosome (in cis), which results in the presence of two functional copies of the gene. In such cases, the individual is not considered a carrier for Congenital Adrenal Hyperplasia (Parajes et al., 2008; Kleinle et al., 2009).
Coats plus syndrome
Galactosemia
Cohen syndrome
HMG-CoA lyase deficiency
Autoimmune polyendocrinopathy type 1
Hemophilia A
Detection of intron 22 inversion in the F8 gene is also included
Short stature-optic atrophy-Pelger-Huët anomaly syndrome; Fever-associated acute infantile liver failure syndrome
Shwachman-Diamond syndrome type 1
Pantothenate Kinase-Associated Neurodegeneration type 1
Knobloch syndrome type 1
X-linked intellectual developmental disorder, Tuner type
Glycine encephalopathy type 1
Methylmalonic acidemia type mut0
Niemann-Pick disease type A/B
Propionic acidemia
Niemann-Pick disease type C1/D
Congenital myasthenic syndrome type 4A, 4B, 4C
CC2D2Arelated disorders
Carbamoyl-phosphate synthetase 1 deficiency
Spastic paraplegia type 39; Oliver-McFarlane syndrome; Boucher-Neuhäuser syndrome
Long chain 3-hydroxyacyl-CoA dehydrogenase deficiency; Mitochondrial trifunctional protein deficiency
Fumarase deficiency
Poretti-Boltshauser syndrome
Hypomyelinating leukodystrophy type 11; Treacher-Collins syndrome type 3
Usher syndrome type 2A; Retinitis pigmentosa type 39
Polycystic kidney disease type 4
Anauxetic dysplasia type 1; Metaphyseal dysplasia without hypotrichosis; Cartilage-hair hypoplasia
Congenital glaucoma type 3A; Anterior segment developmental anomaly
Wolfram syndrome type 1
Sandhoff disease
Citrullinemia type 1
Cockayne syndrome type B; Cerebrooculofacioskeletal syndrome type 1; UV-sensitive syndrome type 1
Microcephalic osteodysplastic primordial dwarfism type 2
Usher syndrome type 1F; Deafness autosomal recessive type 23
Fetal akinesia deformation sequence; Congenital myasthenic syndrome type 10
Smith-Lemli-Opitz syndrome
SLC26A2 related disorders
Hyperphenylalaninemia due to DNAJC12 deficiency
POLG related disorders
Goldmann-Favre syndrome; Retinitis pigmentosa type 37
Interstitial lung disease due to ABCA3 deficiency
Cerebrotendinous xanthomatosis
Nemaline myopathy type 2; Arthrogryposis multiplex congenita type 6
Primary coenzyme Q10 deficiency type 4
Maple syrup urine disease type 1A
X-linked recessive ocular albinism; Congenital Nystagmus type 6
Progressive familial intrahepatic cholestasis type 2
Short rib-polydactyly syndrome type 3
Alpha-N-acetylgalactosaminidase deficiency type 1,2,3
TMEM67 related disorders
Argininosuccinic aciduria
Limb-girdle muscular dystrophy type 3
Meckel syndrome type 5; Joubert syndrome type 7
Autosomal recessive primary microcephaly type 1
Duchenne muscular dystrophy; Becker muscular dystrophy
Omenn syndrome; Combined immunodeficiency with granulomatosis; Severe combined immunodeficiency due to complete RAG1/2 deficiency
Tay-Sachs disease
Ataxia-telangiectasia
FHL1 related disorders
Myotonia congenita
Deafness autosomal recessive type 3
Pyridoxine-dependent epilepsy type 4
Leukoencephalopathy with vanishing white matter type 5
Dystrophic epidermolysis bullosa COL7A1-Related
Glycogen storage disease Ib, Ic
Usher syndrome type 1B; Deafness autosomal recessive type 2
Congenital ichthyosis type 1
Infantile hypophosphatasia
Juvenile amyotrophic lateral sclerosis type 5; Charcot-Marie-Tooth disease type 2X; Spastic paraplegia type 11
Non-specific early-onset epileptic encephalopathy
Baller-Gerold syndrome; Rothmund-Thomson syndrome type 2; RAPADILINO syndrome
Permanent neonatal diabetes mellitus type 3; Hyperinsulinemic hypoglycemia familial type 1
Zellweger syndrome 1A/B; Heimler syndrome 1
Lethal multiple pterygium syndrome; Escobar syndrome
Cone rod dystrophy type 13; Leber congenital amaurosis type 6
Mandibuloacral dysplasia; Emery-Dreifuss muscular dystrophy type 3; Charcot-Marie-Tooth disease type 2B1
Infantile neuroaxonal dystrophy 1; Dystonia-parkinsonism type Paisan-Ruiz; Neurodegeneration with brain iron accumulation type 2B
Pontocerebellar hypoplasia type 6
Salla disease; Free sialic acid storage disease, infantile form
Charcot-Marie-Tooth disease type 4C
Lysinuric protein intolerance
Multiple mitochondrial dysfunctions syndrome type 1; Spastic paraplegia type 93
Behr syndrome
Familial normophosphatemic tumoral calcinosis
Dyskeratosis congenita type 5
Limb-girdle muscular dystrophy type 2A
Pendred syndrome; Deafness autosomal recessive type 4
Primary ciliary dyskinesia type 1
Primary ciliary dyskinesia type 3
Cerebral creatine deficiency syndrome type 3
Wiedemann-Rautenstrauch syndrome; Hypomyelinating leukodystrophy type 7
Limb-girdle muscular dystrophy type 2B; Miyoshi myopathy; Distal myopathy with anterior tibial onset
Orofaciodigital syndrome type 6; Joubert syndrome type 17
Fanconi anemia group J
Primary hyperoxaluria type 1
Ovarioleukodystrophy; Combined oxidative phosphorylation defect type 8
Bardet-Biedl syndrome type 1
Ataxia-telangiectasia-like disorder type 1
Complement factor I deficiency
Leber congenital amaurosis type 13
Ataxia-oculomotor apraxia type 4; Early infantile epileptic encephalopathy
Ceroid lipofuscinosis neuronal tipo 2; Spinocerebellar ataxia type 7
Leber congenital amaurosis type 9; SHILCA syndrome
Succinic semialdehyde dehydrogenase deficiency
Glycogen storage disease type 3A/3B
Adams-Oliver syndrome type 2
Glycogen storage disease type 1A
Mucopolysaccharidosis type 2
Pseudohypoaldosteronism type 1B2
Alström syndrome
Spastic paraplegia type 5A; Congenital bile acid synthesis defect type 3
Nephrotic syndrome type 2
Deafness autosomal recessive type 77
Congenital ichthyosis type 2
Primary ciliary dyskinesia type 15
Bethlem muscular dystrophy type 1C; Ullrich congenital muscular dystrophy type 1C; Primary dystonia, DYT27 type
Junctional epidermolysis bullosa with pyloric atresia type 5B; Intermediate generalized junctional epidermolysis bullosa type 5A
Mucopolysaccharidose type 6
Charcot-Marie-Tooth disease type 4K; Isolated cytochrome C oxidase deficiency
GRACILE syndrome; Björnstad syndrome; Isolated complex III deficiency
Sanfilippo syndrome type B
Autosomal recessive primary microcephaly type 5
Glutaric aciduria type 2C
Warsaw breakage syndrome
Pontocerebellar hypoplasia type 2 and 4
Primary ciliary dyskinesia type 17
Nijmegen breakage syndrome-like disorder
Oculocutaneous albinism type 4
Congenital ichthyosis type 3
Maple syrup urine disease type 1B
Muscular dystrophy due to dystroglycanopathy type 14A, 14B ,14C
Combined oxidative phosphorylation deficiency type 35
Carey-Fineman-Ziter syndrome
Congenital amegakaryocytic thrombocytopenia type 1
Canavan disease
Developmental delay with autism spectrum disorder and gait instability
Peters plus syndrome
Infantile sudden cardiac failure
Androgen insensitivity syndrome
The current testing method does not assess CAG trinucleotide repeats in exon 1 in this gene.
Hemophilia B
Bardet-Biedl syndrome; Joubert syndrome; Meckel syndrome
CLCN5 related disorders
Hereditary fructose intolerance
Classical homocystinuria
Neuronal ceroid lipofuscinosis type 1
Achromatopsia type 2
CEP290 related disorders
Deep intronic variant NM_025114.4:c.2991+1655A>G not included.
Muscular dystrophy-dystroglycanopathy type 4A, 4B, 4C
Achromatopsia type 3
Muscular dystrophy-dystroglycanopathy type 3A, 3B, 3C; Retinitis pigmentosa type 76
Fanconi anemia group C
Xeroderma pigmentosum group D; Trichothiodystrophy type 1
Citrullinemia type 2
Familial dysautonomia
Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; X-linked thrombocytopenia
Laminin subunit alpha 2-related congenital muscular dystrophy
Primary ciliary dyskinesia type 7
Metachromatic leukodystrophy
Glycogen storage disease type 4; Adult polyglucosan body disease
Mucopolysaccharidosis type 4A
GM1 gangliosidosis type 1,2,3; Mucopolysaccharidosis type 4B
Lethal congenital contracture syndrome type 1; Arthrogryposis-anterior horn cell disease syndrome
Hydrolethalus Syndrome
Ivemark syndrome
Primary ciliary dyskinesia type 13
Glycogen storage disease type 7
Combined oxidative phosphorylation deficiency type 3
Hypohidrotic ectodermal dysplasia type 1
Congenital chronic diarrhea with protein-losing enteropathy
Isovaleric acidemia
X-linked centronuclear myopathy
Oculocutaneous albinism type 3
Congenital chloride diarrhea
Pyruvate dehydrogenase E3 deficiency
Cholesteryl ester storage disease; Wolman disease
Congenital myasthenic syndrome type 5
Usher syndrome type 3A
Mucolipidosis type 4
PRPS1 related disorders
Alport syndrome type 1
Myopia type 6
Pyruvate dehydrogenase E1-beta deficiency
Retinitis pigmentosa type 59
Combined oxidative phosphorylation defect type 20
Nephronophthisis type 3; Renal-hepatic-pancreatic dysplasia type 1; Meckel syndrome type 7
Muscular dystrophy-dystroglycanopathy type 5A, 5B, 5C
Adrenomyeloneuropathy
Choroideremia
X-linked heterotaxia; VACTERL with hydrocephalus
Fabry disease
AIFM1 related disorders
IPEX syndrome
Bardet-Biedl syndrome type 10
Mucopolysaccharidosis type 3
Retinoschisis
Ullrich congenital muscular dystrophy type 1B; Bethlem muscular dystrophy type 1B
Fanconi anemia group I
Meckel syndrome type 2; Joubert syndrome type 2; Retinitis pigmentaria type 98
Spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome
Retinitis pigmentosa type 74; Bardet-Biedl syndrome type 2
Aspartylglucosaminuria
Intellectual developmental disorder type 96
TARP syndrome
Multiple congenital anomalies-hypotonia-seizures syndrome type 2; Ferro-cerebro-cutaneous syndrome
X-linked intellectual developmental disorder type 97
Intellectual developmental disorder type 90
Pyruvate dehydrogenase E1-alpha deficiency
Renpenning syndrome
Emery-Dreifuss muscular dystrophy type 1
Familial exudative vitreoretinopathy; Norrie disease
Cerebral creatine deficiency syndrome type 1
X-linked intellectual developmental disorder type 1
Congenital stationary night blindness type 1A
Allan-Herndon-Dudley syndrome
KDM5C-related syndromic X-linked intellectual developmental disorder
FLNA related disorders
MASA syndrome; Hydrocephalus with stenosis of the aqueduct of Sylvius
Leber congenital amaurosis type 1; Cone rod dystrophy type 6; Congenital stationary night blindness type 1I
ATR-X syndrome
Immunodeficiency 34; Chronic granulomatous disease
Isolated growth hormone deficiency type 3; X-linked agammaglobulinemia
Barth syndrome
RETT related disorders
IL10-related early-onset inflammatory bowel disease type 28
Joubert syndrome type 10
Lissencephaly type 1; Subcortical band heterotopia
Mulibrey nanism syndrome
X-linked intellectual developmental disorder type 98
X-linked lymphoproliferative syndrome type 2
Syndromic intellectual developmental disorder type 14
X-linked epilepsy-learning disabilities-behavior disorders syndrome; X-linked intellectual developmental disorder type 50
Kelley-Seegmiller syndrome; Lesch-Nyhan syndrome
X-linked intellectual developmental disorder type 21
X-linked intellectual developmental disorder, Cabezas type
Dent disease type 2; Lowe syndrome
Immunodeficiency with hyper-IgM type 1
Ornithine transcarbamylase deficiency
FG syndrome type 4; X-linked intellectual developmental disorder, Najm type
Meester-Loeys syndrome; X-linked spondyloepimetaphyseal dysplasia
Keratosis follicularis spinulosa decalvans; Ichthyosis follicularis-alopecia-photophobia syndrome; Osteogenesis imperfecta type 19
Intellectual developmental disorder type 99
X-linked combined immunodeficiency
Deafness autosomal recessive type 1B
Variants associated with a mild phenotype are not reported.
Usher syndrome type 2
Erythrokeratodermia variabilis type 1
Variants associated with a mild phenotype are not reported.